Diminutos círculos de ADN que desafían las leyes genéticas impulsan la formación de cáncer

DNA Circles Illustration

Ilustración de círculos de ADN

El ADN extracromosómico (ADNec), círculos de ADN que portan genes asociados con el cáncer, desempeña un papel fundamental en el desarrollo del cáncer, según una nueva investigación dirigida por Stanford Medicine. Estos círculos de ADN se pueden encontrar en células precancerosas y su presencia acelera la transformación a un estado canceroso. Este descubrimiento allana el camino para posibles métodos de intervención y diagnóstico temprano en el tratamiento del cáncer.

pequeños círculos de

El ADN, o ácido desoxirribonucleico, es una molécula compuesta por dos cadenas largas de nucleótidos que se enrollan entre sí para formar una doble hélice. Es el material hereditario de los humanos y de casi todos los demás organismos el que lleva las instrucciones genéticas para el desarrollo, el funcionamiento, el crecimiento y la reproducción. Casi todas las células del cuerpo de una persona tienen el mismo ADN. La mayor parte del ADN se encuentra en el núcleo de la célula (donde se denomina ADN nuclear), pero también se puede encontrar una pequeña cantidad de ADN en las mitocondrias (donde se denomina ADN mitocondrial o mtDNA).

» data-gt-translate-attributes=»[{» attribute=»»>DNA harbor cancer-associated oncogenes and immunomodulatory genes promoting cancer development. They arise during the transformation from pre-cancer to cancer, say Stanford Medicine-led team.

Tiny circles of DNA that defy the accepted laws of genetics are key drivers of cancer formation, according to an international study led by researchers at Stanford Medicine.

The circles, known as extrachromosomal DNA or ecDNA, often harbor cancer-associated genes called oncogenes. Because they can exist in large numbers in a cell, they deliver a super-charged growth signal that can override a cell’s natural programming. They also contain genes likely to dampen the immune system’s response to a nascent cancer, the researchers found.

Previous research had suggested that the circles, which are widespread in human cancers but rarely found in healthy cells, primarily arise in advanced tumors as the abnormal cells increasingly botch the intricate steps required to copy their DNA before each cell division. But the new study shows that the roly-poly circles can be found even in precancerous cells — and their presence jump-starts a cancerous transformation. Blocking their formation, or their effect on the cells that carry them, might stop cancers from developing, the researchers believe.

“This study has profound implications for our understanding of ecDNA in tumor development,” said professor of pathology Paul Mischel, MD. “It shows the power and diversity of ecDNA as a fundamental process in cancer. It has implications for early diagnosis of precancers that put patients at risk, and it highlights the potential for earlier intervention as treatments are developed.”

Tiny Circles of DNA

Tiny circles of DNA (small rings) upend conventional genetic principles that govern inheritance of genes on chromosomes (oblongs). The large blue circles are cell nuclei. Credit: Paul Mischel lab

Mischel is one of six senior authors of the research, which was published recently in the journal Nature. Howard Chang, MD, PhD, professor of genetics and the Virginia and D.K. Ludwig Professor in Cancer Research, is also a senior author. Other senior authors include senior staff scientist Thomas Paulson, PhD, from Seattle’s Fred Hutchison Cancer Center; assistant professor of pediatrics Sihan Wu, PhD, assistant professor at Children’s Medical Center Research Institute at the University of Texas Southwestern Medical Center; professor of computer science and engineering Vineet Bafna, PhD, from UC San Diego; and professor of cancer prevention and director of the Early Cancer Institute Rebecca Fitzgerald, MD, from the University of Cambridge.

“People with ecDNA in their precancerous cells are 20 to 30 times more likely than others to develop cancer,” Chang said. “This is a huge increase, and it means we really need to pay attention to this. Because we also found that some ecDNAs carry genes that affect the immune system, it suggests that they may also promote early immune escape.”

A grand challenge

Deciphering ecDNA’s role in cancer was one of four Cancer Grand Challenges awarded by the National Cancer Institute and Cancer Research UK in 2022. The grand challenges program was launched to bring together researchers from around the world to tackle complex research topics too daunting for any one group. Mischel was awarded $25 million to lead a team of international researchers to learn more about the circles. But first they had to jettison some key genetic principles that have guided the field for nearly 200 years.

“When we think about how a tumor evolves in a patient and in response to treatment, we think of the branching trees of life proposed by Charles Darwin,” Mischel said. “This idea is so powerful that researchers often sequence the DNA from multiple parts of a tumor and draw these trees to learn about its evolution. If a mutation is there at the trunk of the tree and in all of its branches, we assume it is a key driver event in the formation of the tumor; if it is in only some branches, we assume it happened later in tumor development and may not be a good target for drug development.”

But these assumptions hinge on the idea that all of a tumor’s DNA is neatly contained on chromosomes, which are evenly divided among daughter cells each time a cancer cell divides — ensuring that each new cell gets one, and only one, copy of each chromosome.

In contrast, the tiny ecDNA circles swirl in a dividing cell like bubbles circling a bathtub drain and are portioned willy-nilly between the new daughter cells. One may get nearly all the circles; the other, almost none. As the generations accumulate, the evolutionary tree favored by Darwin begins to look decidedly odd, with the appearance of ecDNA-bearing cells sprinkled among the branches like haphazardly hung Christmas lights.

“Some researchers have looked at the evolutionary trees and decided that, because you see it here, but not there, it must be that ecDNA formation is a late event and probably isn’t important when considering treatments,” Mischel said. “Our team thought that interpretation was wrong.”

Pinpointing a reason

To get to the bottom of the tiny circles, Mischel, Chang and their collaborators turned to a specific example of cancer development — people with a condition known as Barrett’s esophagus, which occurs when the cells lining the lower part of the esophagus are damaged by

What to look at next

The researchers are planning to explore more about how ecDNAs arise in cancer cells and how they work together to make proteins that drive cancer cell growth. They saw that cancers with ecDNA were likely to also have mutations in a protein called p53. Sometimes called “the guardian of the genome,” p53 temporarily halts the cell cycle to allow cells to repair damage or mutations to their DNA before beginning to divide.

“We want to learn more about the landscape of ecDNA in precancers and the risks it confers,” Mischel said. “We also want to know if we can stop its formation or activity; how to improve our ability to detect their presence; how they affect the immune system; and whether there are opportunities for new, novel therapies. There is much more to learn, and our team is excited to tackle all these issues. But what we do know for certain is that these tiny DNA circles are a very big deal in cancer.”

Reference: “Extrachromosomal DNA in the cancerous transformation of Barrett’s oesophagus” by Jens Luebeck, Alvin Wei Tian Ng, Patricia C. Galipeau, Xiaohong Li, Carissa A. Sanchez, Annalise C. Katz-Summercorn, Hoon Kim, Sriganesh Jammula, Yudou He, Scott M. Lippman, Roel G. W. Verhaak, Carlo C. Maley, Ludmil B. Alexandrov, Brian J. Reid, Rebecca C. Fitzgerald, Thomas G. Paulson, Howard Y. Chang, Sihan Wu, Vineet Bafna and Paul S. Mischel, 12 April 2023, Nature.
DOI: 10.1038/s41586-023-05937-5

Mischel is a member of the Stanford Cancer Institute, the professor and vice chair for research in the department of pathology, and an Institute Scholar at Sarafan ChEM-H. Chang is a member of the Center of Excellence in Genomic Science, Stanford’s Bio-X, the Stanford Cancer Institute, the Wu Tsai Neurosciences Institute, and the Maternal and Child Health Research Institute.

Researchers from Sungkyunkwan University in Korea, the Jackson Laboratory for Genomic Medicine, Arizona State University, and the

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